Retrieve from the TaxSEA database which taxon sets (metabolite producers and disease signatures) contain a taxon of interest.
Value
A character vector containing the names of taxonomic sets where the specified taxon is present.
Examples
# Retrieve sets for Bifidobacterium longum
get_taxon_sets(taxon="Bifidobacterium_longum")
#> [1] "GMRepoV2_Decreased_in_Adenoma"
#> [2] "GMRepoV2_Decreased_in_COVID-19"
#> [3] "GMRepoV2_Increased_in_Spondylitis,_Ankylosing"
#> [4] "GMRepoV2_Increased_in_Tuberculosis"
#> [5] "GutMGene_producers_of_4-Hydroxyphenylacetic_acid"
#> [6] "GutMGene_producers_of_5-Acetamido-2-azaniumylpentanoate"
#> [7] "GutMGene_producers_of_Acetate"
#> [8] "GutMGene_producers_of_Arctigenin"
#> [9] "GutMGene_producers_of_Daidzein"
#> [10] "GutMGene_producers_of_Dihydrocaffeic_acid"
#> [11] "GutMGene_producers_of_Genipin"
#> [12] "GutMGene_producers_of_Genistein"
#> [13] "GutMGene_producers_of_Ginsenoside-Rd"
#> [14] "GutMGene_producers_of_Glycitein"
#> [15] "GutMGene_producers_of_Hydroquinone"
#> [16] "GutMGene_producers_of_Indole-3-acetic_acid"
#> [17] "GutMGene_producers_of_Indole-3-lactic_acid"
#> [18] "GutMGene_producers_of_Kaempferol"
#> [19] "GutMGene_producers_of_Lactate"
#> [20] "GutMGene_producers_of_Loganetin"
#> [21] "GutMGene_producers_of_Oxyberberine"
#> [22] "GutMGene_producers_of_Phenylalanine"
#> [23] "MiMeDB_producers_of_3IAA"
#> [24] "MiMeDB_producers_of_Acetic_acid"
#> [25] "MiMeDB_producers_of_Butyric_acid"
#> [26] "MiMeDB_producers_of_Dimethylamine_"
#> [27] "MiMeDB_producers_of_Folic_acid"
#> [28] "MiMeDB_producers_of_GABA"
#> [29] "MiMeDB_producers_of_Glycocholic_acid"
#> [30] "MiMeDB_producers_of_Hydrogen_sulfide"
#> [31] "MiMeDB_producers_of_Indole"
#> [32] "MiMeDB_producers_of_Propionic_acid"
#> [33] "MiMeDB_producers_of_Taurocholic_acid"
#> [34] "BacDive_anaerobe"
#> [35] "Mucin_utilisers"
#> [36] "Valles-Colomer2019_MGB005.Tryptophan.synthesis"
#> [37] "Valles-Colomer2019_MGB006.Glutamate.synthesis.I"
#> [38] "Valles-Colomer2019_MGB007.Glutamate.synthesis.II"
#> [39] "Valles-Colomer2019_MGB029.ClpB.(ATP-dependent.chaperone.protein)"
#> [40] "Valles-Colomer2019_MGB032.Quinolinic.acid.synthesis"
#> [41] "Valles-Colomer2019_MGB033.Quinolinic.acid.degradation"
#> [42] "Valles-Colomer2019_MGB035.Isovaleric.acid.synthesis.II.(KADC.pathway)"
#> [43] "Valles-Colomer2019_MGB036.S-Adenosylmethionine.(SAM).synthesis"
#> [44] "Valles-Colomer2019_MGB043.Acetate.synthesis.I"